Data Creators(s) Item Type No Grouping

Dataset

High-throughput sequencing provides insights into genome variation and evolution in Salmonella Typhi. (2008) Holt, Kathryn E; Parkhill, Julian; Mazzoni, Camila J; Roumagnac, Philippe; Weill, François-Xavier; Goodhead, Ian; Rance, Richard; Baker, Stephen; Maskell, Duncan J; Wain, John; Dolecek, Christiane; Achtman, Mark; Dougan, Gordon

katholt/srst2. (2021) Inouye, Michael; Dashnow, Harriet; Pope, Bernie; Wick, Ryan; Holt, Kathryn E.

Age-Dependent Prevalence of Nasopharyngeal Carriage of Streptococcus pneumoniae before Conjugate Vaccine Introduction: Supporting Information. (2014) Le Polain, Olivier; Flasche, Stefan; Prieto, David; Edmunds, John description

Rapid bacterial identification and resistance detection using a low complexity molecular diagnostic platform in Zimbabwe - Study dataset and codebook. (2025) Mwaturura, Tinashe; Olaru, Ioana D.; Chimhini, Gwendoline; Bwakura-Dangarembizi, Mutsa; Mangiza, Marcia; Chimhuya, Simbarashe; Sado, Belinda; Katunga, Jackie; Tarupiwa, Andrew; Juru, Agnes; Mashe, Tapfumaneyi; Pasi, Christopher; Chuchu, Veronicah; Gansallo, Seyi; Gleeson, Birgitta; Fitzgerald, Felicity; Ferreyra, Cecilia; Kranzer, Katharina

Contribution of nosocomial transmission to Klebsiella pneumoniae neonatal sepsis in Africa and South Asia: An observational study of infection clusters inferred from pathogen genomics and temporal data. (2026) Odih, Erkison Ewomazino; Abdulahi, Jabir A.; Amulele, Anne V.; Bates, Matthew; Heinz, Eva; Hu, Weiming; Jain, Kajal; Magobo, Rindidzani; Olwagen, Courtney P.; Tembo, John M.; Sonda, Tolbert; Strysko, Jonathan; Tigoi, Caroline C.; Bittinger, Kyle; Cornick, Jennifer; Foster-Nyarko, Ebenezer; Gumbi, Wilson; Jones, Steven M.; Musyani, Chileshe L.; McGann, Carolyn M.; Moustafa, Ahmed M.; Musicha, Patrick; Mwansa, James C. L.; Ndumba, Moreka L.; Stanton, Thomas D.; Omuoyo, Donwilliams O.; Pearse, Oliver; Phillips, Laura T.; Planet, Paul J.; Rodrigues, Charlene M. C.; Secka, Fatou; Sands, Kirsty; Theiller, Erin; Zuza, Allan M.; Basu, Sulagna; Chan, Grace J.; Iregbu, Kenneth C.; Mazarati, Jean-Baptiste; Alemayehu, Semaria Solomon; Walsh, Timothy R.; Zahra, Rabaab; Dramowski, Angela; Fwoloshi, Sombo; Labi, Appiah-Korang; Madrid, Lola; Obeng-Nkrumah, Noah; Ojok, David; Wadugu, Boaz D.; Whitelaw, Andrew C.; Bhargava, Anudita; Jindal, Atul; Agarwal, Ramesh K.; Aiken, Alexander M.; Berkley, James A.; Coffin, Susan E.; Feasey, Nicholas A.; Govender, Nelesh P.; Hamer, Davidson H.; Madhi, Shabir A.; Sankar, Mari Jeeva; Wyres, Kelly L.; Holt, Kathryn E.

Isolates and sequence data included in the study "Contribution of nosocomial transmission to Klebsiella pneumoniae neonatal sepsis in Africa and South Asia: An observational study of infection clusters inferred from pathogen genomics and temporal data". (2026) Odih, Erkison Ewomazino; Abdulahi, Jabir A.; Amulele, Anne V.; Bates, Matthew; Heinz, Eva; Hu, Weiming; Jain, Kajal; Magobo, Rindidzani; Olwagen, Courtney P.; Tembo, John M.; Sonda, Tolbert; Strysko, Jonathan; Tigoi, Caroline C.; Bittinger, Kyle; Cornick, Jennifer; Foster-Nyarko, Ebenezer; Gumbi, Wilson; Jones, Steven M.; Musyani, Chileshe L.; McGann, Carolyn M.; Moustafa, Ahmed M.; Musicha, Patrick; Mwansa, James C. L.; Ndumba, Moreka L.; Stanton, Thomas D.; Omuoyo, Donwilliams O.; Pearse, Oliver; Phillips, Laura T.; Planet, Paul J.; Rodrigues, Charlene M. C.; Secka, Fatou; Sands, Kirsty; Theiller, Erin; Zuza, Allan M.; Basu, Sulagna; Chan, Grace J.; Iregbu, Kenneth C.; Mazarati, Jean-Baptiste; Alemayehu, Semaria Solomon; Walsh, Timothy R.; Zahra, Rabaab; Dramowski, Angela; Fwoloshi, Sombo; Labi, Appiah-Korang; Madrid, Lola; Obeng-Nkrumah, Noah; Ojok, David; Wadugu, Boaz D.; Whitelaw, Andrew C.; Bhargava, Anudita; Jindal, Atul; Agarwal, Ramesh K.; Aiken, Alexander M.; Berkley, James A.; Coffin, Susan E.; Feasey, Nicholas A.; Govender, Nelesh P.; Hamer, Davidson H.; Madhi, Shabir A.; Sankar, M. Jeeva; Wyres, Kelly L.; Holt, Kathryn E.

Isolates and sequence data included in the study "Transmission dynamics of Klebsiella pneumoniae in a neonatal intensive care unit in Zambia before and after an infection control bundle". (2026) Phillips, Laura T.; Bates, Matthew; Coffin, Susan E.; Foster-Nyarko, Ebenezer; Kapasa, Monica; Machona, Sylvia; Mwananyanda, Lawrence; Mwansa, James C. L.; Musyani, Chileshe L.; Tembo, John M.; Egbe, Franklyn N.; Holt, Kathryn E.; Hamer, Davidson H.

A prospective observational study of community-acquired bacterial bloodstream infections in Metro Manila, the Philippines. Data file of the study. (2022) Saito, Nobuo; Solante, Rontgene M.; Guzman, Ferdinand D.; Telan, Elizabeth O.; Umipig, Dorcas V.; Calayo, Joy P.; Frayco, Carina H.; Lazaro, Jezreel C.; Ribo, Maricel R.; Dimapilis, Alexis Q.; Dimapilis, Virginia O.; Villanueva, Annavi M.; Mauhay, Jaira L.; Suzuki, Motoi; Yasunami, Michio; Koizumi, Nobuo; Kitashoji, Emi; Sakashita, Kentaro; Yasuda, Ikkoh; Nishiyama, Akira; Smith, Chris; Ariyoshi, Koya; Parry, Christopher M.

Total area predicted suitable and population living in suitable areas for Buruli ulcer, M. ulcerans, and both, by country in African continent. (2021) Simpson, Hope; Tabah, Earnest Njih; Phillips, Richard O.; Frimpong, Michael; Maman, Issaka; Ampadu, Edwin; Timothy, Joseph; Saunderson, Paul; Pullan, Rachel L.; Cano, Jorge

CCI score and blood culture dataset. (2025) Tauran, Patricia M; Arif, Mansyur; Limmathurotsakul, Direk; de Kraker, Marlieke E. A.; Aiken, Alexander M.